Integrated small RNA, transcriptome and physiological approaches provide insight into Taxodium hybrid 'Zhongshanshan' roots in acclimation to prolonged flooding.

Although Taxodium hybrid 'Zhongshanshan' 406 (Taxodium mucronatum Tenore × Taxodium distichum; Taxodium 406) is an extremely flooding-tolerant woody plant, the physiological and molecular mechanisms underlying acclimation of its roots to long-term flooding remain largely unknown. Thus, we exposed saplings of Taxodium 406 to either non-flooding (control) or flooding for 2 months. Flooding resulted in reduced root biomass, which is in line with lower concentrations of citrate, α-ketoglutaric acid, fumaric acid, malic acid and adenosine triphosphate (ATP) in Taxodium 406 roots. Flooding led to elevated activities of pyruvate decarboxylase, alcohol dehydrogenase and lactate dehydrogenase, which is consistent with higher lactate concentration in the roots of Taxodium 406. Flooding brought about stimulated activities of superoxide dismutase and catalase and elevated reduced glutathione (GSH) concentration and GSH/oxidized glutathione, which is in agreement with reduced concentrations of O2- and H2O2 in Taxodium 406 roots. The levels of starch, soluble protein, indole-3-acetic acid, gibberellin A4 and jasmonate were decreased, whereas the concentrations of glucose, total non-structural carbohydrates, most amino acids and 1-aminocyclopropane-1-carboxylate (ACC) were improved in the roots of flooding-treated Taxodium 406. Underlying these changes in growth and physiological characteristics, 12,420 mRNAs and 42 miRNAs were significantly differentially expressed, and 886 miRNA-mRNA pairs were identified in the roots of flooding-exposed Taxodium 406. For instance, 1-aminocyclopropane-1-carboxylate synthase 8 (ACS8) was a target of Th-miR162-3p and 1-aminocyclopropane-1-carboxylate oxidase 4 (ACO4) was a target of Th-miR166i, and the downregulation of Th-miR162-3p and Th-miR166i results in the upregulation of ACS8 and ACO4, probably bringing about higher ACC content in flooding-treated roots. Overall, these results indicate that differentially expressed mRNA and miRNAs are involved in regulating tricarboxylic acid cycle, ATP production, fermentation, and metabolism of carbohydrates, amino acids and phytohormones, as well as reactive oxygen species detoxification of Taxodium 406 roots. These processes play pivotal roles in acclimation to flooding stress. These results will improve our understanding of the molecular and physiological bases underlying woody plant flooding acclimation and provide valuable insights into breeding-flooding tolerant trees.

Molecular Mechanism of Different Rooting Capacity between Two Clones of Taxodium hybrid 'Zhongshanshan'.

The conifer Taxodium hybrid 'Zhongshanshan' (T. hybrid 'Zhongshanshan') is characterized by rapid growth, strong stress resistance, and high ornamental value and has significant potential for use in afforestation, landscaping, and wood production. The main method of propagating T. hybrid 'Zhongshanshan' is tender branch cutting, but the cutting rooting abilities of different T. hybrid 'Zhongshanshan' clones differ significantly. To explore the causes of rooting ability differences at a molecular level, we analyzed the transcriptome data of cutting base and root tissues of T. hybrid 'Zhongshanshan 149' with a rooting rate of less than 5% and T. hybrid 'Zhongshanshan 118' with rooting rate greater than 60%, at the developmental time points in this study. The results indicated that differentially expressed genes between the two clones were mainly associated with copper ion binding, peroxidase, and oxidoreductase activity, response to oxidative stress, phenylpropanoid and flavonoid biosynthesis, and plant hormone signal transduction, among others. The expression pattern of ThAP2 was different throughout the development of the adventitive roots of the two clone cuttings. Therefore, this gene was selected for further study. It was shown that ThAP2 was a nuclear-localized transcription factor and demonstrated a positive feedback effect on rooting in transgenic Nicotiana benthamiana cuttings. Thus, the results of this study explain the molecular mechanism of cutting rooting and provide candidate gene resources for developing genetic breeding strategies for optimizing superior clones of T. hybrid 'Zhongshanshan'.

Physiological and transcriptional regulation in Taxodium hybrid 'Zhongshanshan' leaves in acclimation to prolonged partial submergence.

MAIN CONCLUSION: Taxodium 703 leaves activate fermentation, amino acids metabolism and ROS detoxification, and reduce TCA cycle and ABA biosynthesis in acclimation to prolonged partial submergence stress. Taxodium hybrid 'Zhongshanshan 703' (T. mucronatum × T. distichum; Taxodium 703) is a highly flooding-tolerant woody plant. To investigate the physiological and transcriptional regulatory mechanisms underlying its leaves in acclimation to long-term flooding, we exposed cuttings of Taxodium 703 to either non-flooding (control) or partial submergence for 2 months. The leaf tissues above (AL) and below (BL) flooding-water were separately harvested. Partial submergence decreased concentrations of chlorophyll (a + b) and dehydroascorbate (DHA) and lactate dehydrogenase (LDH) activity in AL, and reduced biomass, concentrations of succinic acid, fumaric acid and malic acid, and transcript levels of genes involved in tricarboxylic acid (TCA) cycle in BL. Under partial submergence, concentrations of starch, malondialdehyde and abscisic acid (ABA) decreased, and also mRNA levels of nine-cis-epoxycarotenoid dioxygenases that are involved in ABA biosynthesis in AL and BL of Taxodium 703. Partial submergence increased O2- content in AL, and improved concentrations of pyruvate and soluble sugars and activities of LDH and peroxidase in BL. In addition, partial submergence increased concentrations of ethanol, lactate, alanine, γ-aminobutyric acid, total amino acids and ascorbic acid (ASA), and ASA/DHA, activities of alcohol dehydrogenases (ADH) and ascorbate peroxidase, as well as transcript levels of ADH1A, ADH1B and genes involved in alanine biosynthesis and starch degradation in AL and BL of Taxodium 703. Overall, these results suggest that Taxodium 703 leaves activate fermentation, amino acids metabolism and reactive oxygen species detoxification, and maintain a steady supply of sugars, and reduce TCA cycle and ABA biosynthesis in acclimation to prolonged partial submergence stress.

[Structural Diversity and Its Temporal Variation in the Soil Bacterial Community Under Plantations of Taxodium distichum in the Riparian Zone of the Three Gorges Reservoir Area].

The riparian zone supports important ecological functions and acts as an ecotone connecting terrestrial and aquatic areas. Soil microbes under the revegetation of woody species are crucial to the biogeochemical cycle of nutrients. Here, soil samples were collected to examine the soil microbes during different emergence phases in 2019 (May:T1, July:T2, and September:T3) in the riparian zone of the Three Gorges Reservoir, China. The variations in the bacterial community were evaluated using high-throughput sequencing. The results showed that:during the emergence phases, soil properties such as pH value (pH), ammonium nitrogen (NH4+-N), and nitrate-nitrogen (NO3--N) and soil enzymes changed significantly(P<0.05), and soil bacterial α diversity also changed with time. Except for the Chao1 index, the richness of rhizosphere soil bacteria showed T1>T2>T3, whereas the α diversity of non-rhizosphere soil bacteria showed T3>T1>T2. The redundancy analysis (RDA) test implied that soil urease, NH4+-N, pH, and NO3--N were the key factors structuring the microbial community. Proteobacteria and Acidobacteria were the two dominant components among the 60 phyla that were detected in the soil. Based on phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt2) prediction, metabolism was the basic function of soil bacterial communities of Taxodium distichum; in the secondary functional layer, the metabolic pathways related to carbon, nitrogen, and phosphorus mainly included amino acid metabolism, carbohydrate metabolism, lipid compound metabolism, and energy metabolism, and the relative abundance of each metabolic function had a certain time difference in different periods. These findings could help us better understand how soil microbes change after restoring vegetation in the Three Gorges Reservoir area.

How Biochar Derived from Pond Cypress (Taxodium Ascendens) Evolved with Pyrolysis Temperature and Time and Their End Efficacy Evaluation.

Biomass type, pyrolysis temperature, and duration can affect biochar properties simultaneously. To further clarify the mechanism of this interaction, the branch and leaf parts of Pond cypress (Taxodium ascendens) were separately pyrolyzed at four peak temperatures (350 °C, 450 °C, 650 °C, and 750 °C) for three different durations (0.5 h, 1 h, and 2 h) in this study. The resulting biochar properties were measured, which included the yield, specific surface area (SSA), pH, EC (electricity conductivity), the bulk and surface elemental composition, and the contents of moisture, ash, fixed carbon, and volatile matter. The results showed that the pyrolysis temperature was more determinant for the modification of all biochar, but the residence time had a significant effect on the yield, pH, and SSA of branch-based biochar (B-biochar) at specific temperatures. However, such a phenomenon only happened on the pH of leaf-based biochar (L-biochar). Results: (1) With the temperature at 350 and 650 °C, the residence time had a significant effect on the yield of B-biochar. (2) The pH of B-biochar and L-biochar varied considerably between durations when the heating temperature hit 650 and 750 °C. (3) The SSA of B-biochar possessed an obvious fluctuation with the time during the pyrolysis from 650 to 750 °C. According to the properties measured above, the principal component and the cluster analysis classified the 24 types of biochar made in this experiment into four groups and revealed that an obvious disparity existed between B-biochar and L-biochar that were pyrolyzed at temperatures ranging from 450 to 750 °C, which suggested that biomass type was the primary factor for biochar-making. All this information can provide valuable references for the optimization of biochar-making in the real world.

Biometric Identification of Taxodium spp. and Their Hybrid Progenies by Electrochemical Fingerprints.

The use of electrochemical fingerprints for plant identification is an emerging application in biosensors. In this work, Taxodium ascendens, T. distichum, T. mucronatum, and 18 of their hybrid progenies were collected for this purpose. This is the first attempt to use electrochemical fingerprinting for the identification of plant hybrid progeny. Electrochemical fingerprinting in the leaves of Taxodium spp. was recorded under two conditions. The results showed that the electrochemical fingerprints of each species and progeny possessed very suitable reproducibility. These electrochemical fingerprints represent the electrochemical behavior of electrochemically active substances in leaf tissues under specific conditions. Since these species and progenies are very closely related to each other, it is challenging to identify them directly using a particular electrochemical fingerprinting. Therefore, electrochemical fingerprints measured under different conditions were used to perform pattern recognition. We can identify different species and progenies by locating the features in different pattern maps. We also performed a phylogenetic study with data from electrochemical fingerprinting. The results proved that the electrochemical classification results and the relationship between them are closely related.

Identification and Functional Analysis of ThADH1 and ThADH4 Genes Involved in Tolerance to Waterlogging Stress in Taxodium hybrid 'Zhongshanshan 406'.

The Taxodium hybrid 'Zhongshanshan 406' (T. hybrid 'Zhongshanshan 406') [Taxodium mucronatum Tenore × Taxodium distichum (L.). Rich] has an outstanding advantage in flooding tolerance and thus has been widely used in wetland afforestation in China. Alcohol dehydrogenase genes (ADHs) played key roles in ethanol metabolism to maintain energy supply for plants in low-oxygen conditions. Two ADH genes were isolated and characterized-ThADH1 and ThADH4 (GenBank ID: AWL83216 and AWL83217-basing on the transcriptome data of T. hybrid 'Zhongshanshan 406' grown under waterlogging stress. Then the functions of these two genes were investigated through transient expression and overexpression. The results showed that the ThADH1 and ThADH4 proteins both fall under ADH III subfamily. ThADH1 was localized in the cytoplasm and nucleus, whereas ThADH4 was only localized in the cytoplasm. The expression of the two genes was stimulated by waterlogging and the expression level in roots was significantly higher than those in stems and leaves. The respective overexpression of ThADH1 and ThADH4 in Populus caused the opposite phenotype, while waterlogging tolerance of the two transgenic Populus significantly improved. Collectively, these results indicated that genes ThADH1 and ThADH4 were involved in the tolerance and adaptation to anaerobic conditions in T. hybrid 'Zhongshanshan 406'.

Germination potential of baldcypress (Taxodium distichum) swamp soil seed bank along geographical gradients.

Changing environments of temperature, precipitation and moisture availability can affect vegetation in ecosystems, by affecting regeneration from the seed bank. Our objective was to explore the responses of soil seed bank germination to climate-related environments along geographic gradients. We collected seed banks in baldcypress (Taxodium distichum) swamps along the Mississippi River and the Gulf of Mexico Coast in the United States, which have distinct temperature and/or precipitation gradients, and germinated them in a greenhouse. The frequency, richness and seed density of species germinated from the seed bank were compared between various geographic locations, experimental water regimes (saturated, flooded) and wetland types (tidal, non-tidal and inland swamps). We also analyzed the relationship of seed density to the environment by using a Non-metric Multi-dimensional Scaling (NMDS) model. Sixty-one species germinated from the seed bank, differing in pattern by geographic location, experimental water regime and wetland type. The foundation species (i.e., T. distichum and Cephalanthus occidentalis) germinated with a niche affinity for the northern part of the latitudinal gradient (Tennessee and Illinois) and these species may shift northward with climate change. Some species had higher seed density in the locations that were subject to more persistent drought conditions (e.g., Texas) including Cyperus rotundus and Gratiola virginiana, indicating that these species may be better adapted to sites with high temperature and low precipitation. In contrast, certain species including Saururus cernuus and Ludwigia palustris were present throughout the range of these gradients, and so may be more resilient to any future climate shifts. We found that the regeneration potential of baldcypress swamps might be altered by changes in local and climate environment because of nuances of responses of seed banks to climates along latitudinal and longitudinal gradients. Our study can help predict vegetation regeneration potential to climate change environments depending on the ability of these species to disperse and maintain seed banks.

Reconstrucción de precipitación y temperatura con anillos de crecimiento anual del ciprés Taxodium mucronatum (Taxodiaceae) en Coahuila, México / Reconstruction of precipitation and temperature with annual growth rings of the cypress Taxodium mucronatum (Taxodiaceae) in Coahuila, Mexico

Introducción: La determinación del clima en cuencas productoras de agua, como la del río Sabinas, Coahuila, donde no existe información de su variabilidad, se puede estimar mediante anillos de crecimiento de ahuehuete (Taxodium mucronatum Ten.), especie longeva con anillos bien definidos, presente en las zonas ribereñas, constituye un "proxy" o método indirecto de la variabilidad climática interanual y multianual. Objetivo: Desarrollar una reconstrucción estacional de precipitación y temperatura máxima y analizar la influencia que ejercen fenómenos de circulación global en el crecimiento de la especie. Métodos: Los núcleos de crecimiento de T. mucronatum fueron datados a través de técnicas dendrocronológicas para producir una serie de ancho de anillo. Se utilizaron datos de mallas del clima de dos bases de datos para desarrollar el análisis de la función de respuesta con fines de reconstrucción climática. Resultados: Una cronología de anillo total de 218 años (1808-2018) se desarrolló con especímenes de T. mucronatum en parajes del Río Sabinas, con la que se generó una reconstrucción estacional de precipitación abril-junio y de temperatura máxima junio-julio. El periodo detectado más seco se presentó de 1815 a 1818 con una precipitación de 27.39 mm y una temperatura máxima de 41.16 °C; mientras que el año más húmedo fue 1828 con 393.72 mm. La cronología de anillo total se correlacionó con los índices de sequía SPEI y PDSI, y con índices de fenómenos atmosféricos como El Niño Oscilación del Sur, a través del Índice de Oscilación del Sur (SOI) y el índice Multivariado (MEI); Oscilación Decadal del Pacífico (PDO) y Oscilación Multidecadal del Atlántico (AMO). La relación entre el índice de anillo total y el del Índice Estandarizado de Precipitación Evaporación (SPEI) mostró significancia en el mes de junio (r = 0.52, P < 0.01), al igual que el Índice de Severidad de Sequía del Palmer (PDSI), PDSI anual (r = 0.38, P < 0.05). El SOI reconstruido noviembre-febrero, se asoció significativamente con la serie dendrocronológica (r = -0.41, P < 0.01). La Oscilación Decadal del Pacífico y la Oscilación Multidecadal del Atlántico, no mostraron significancia. Conclusiones: En este estudio, desarrollamos una función de respuesta climática y reconstruimos variables climáticas estacionales (precipitación, temperatura máxima) de importancia para desarrollar estrategias de manejo para la conservación de T. mucronatum en esta cuenca, e implementar acciones de mitigación para la presencia de eventos climáticos extremos que se pueden presentar en los próximos años.

Introduction: Dendroclimatic reconstructions in water-yield basins lacking hydroclimatic data, such as the Rio Sabinas is important to analyze its interannual and multiannual climatic variability. One of the species useful for this purpose is the Montezuma baldcypress (Taxodium mucronatum Ten.), a long-lived species with well-defined annual rings, present along the riparian zone of the Rio Sabinas that constitutes a "proxy" of interannual and multiannual climate variability. Objective: Develop a seasonal precipitation and maximum temperature reconstructions, and to analyze the influence of global circulatory modes on the species annual radial increase. Methods: Increment cores of the Montezuma baldcypress specimens were dated through dendrochronological techniques to produce a ring-width series. Climate gridded data from two databases were used to develop a response function analysis for climate reconstruction purposes. Results: A ring-width chronology extending from 1808 to 2018 (211 years) was developed and used to develop a seasonal April-June precipitation and a mean June-July maximum temperature reconstruction. The driest period detected on the rainfall reconstruction occurred from 1815 to 1818 with 27.4 mm and a maximum temperature of 41.2 °C; while the wettest year was 1828 with 393.72 mm. The ring-width chronology was correlated with the Standardized Precipitation Evaporation Index (SPEI) and the Palmer Drought Severity Index (PDSI), and with indices of atmospheric phenomena such as El Niño Southern Oscillation (ENSO), through the Southern Oscillation Index (SOI) and the Multivariate Index (MEI); Pacific Decadal Oscillation (PDO), and the Atlantic Multidecadal Oscillation (AMO). The relationship between the ring-width series and drought indices (SPEI, PDSI) was significant in June (r = 0.52, P < 0.01), and June-August (r = 0.38, P < 0.05) for the SPEI and reconstructed PDSI, respectively. It was found a significant association between the ring-width chronology and the reconstructed November-February SOI (r = -0.41, P < 0.01). The Pacific Decadal Oscillation and the Atlantic Multidecadal Oscillation were not significant. Conclusions: On this study, we developed a climatic response function and reconstructed seasonal climatic variables (precipitation, maximum temperature) of importance to develop management strategies for conservation of the Montezuma bald cypress on this basin, and to implement mitigation actions for the presence of extreme climatic events that may occur in coming years.

Taxodisones A and B: bioactive C30-terpenes with new skeletons from Taxodium distichum and their biosynthetic origin.

Taxodisones A and B, C30-terpenes with an unprecedented tetracyclo[12.4.0.0.2,709,14]octodecane core, were isolated from the seeds of Taxodium distichum. Their structures, including their configurations, were unambiguously determined. Their biomimetic synthesis suggests that they stem from diterpenes and monoterpenes, and not from squalene or oxidosqualene. In addition, their bioactivities were also evaluated.

Comparative chloroplast genomics of the genus Taxodium.

BACKGROUND: Chloroplast (cp) genome information would facilitate the development and utilization of Taxodium resources. However, cp genome characteristics of Taxodium were poorly understood. RESULTS: We determined the complete cp genome sequences of T. distichum, T. mucronatum, and T. ascendens. The cp genomes are 131,947 bp to 132,613 bp in length, encode 120 genes with the same order, and lack typical inverted repeat (IR) regions. The longest small IR, a 282 bp trnQ-containing IR, were involved in the formation of isomers. Comparative analysis of the 3 cp genomes showed that 91.57% of the indels resulted in the periodic variation of tandem repeat (TR) motifs and 72.46% single nucleotide polymorphisms (SNPs) located closely to TRs, suggesting a relationship between TRs and mutational dynamics. Eleven hypervariable regions were identified as candidates for DNA barcode development. Hypothetical cp open reading frame 1(Ycf1) was the only one gene that has an indel in coding DNA sequence, and the indel is composed of a long TR. When extended to cupressophytes, ycf1 genes have undergone a universal insertion of TRs accompanied by extreme length expansion. Meanwhile, ycf1 also located in rearrangement endpoints of cupressophyte cp genomes. All these characteristics highlight the important role of repeats in the evolution of cp genomes. CONCLUSIONS: This study added new evidence for the role of repeats in the dynamics mechanism of cp genome mutation and rearrangement. Moreover, the information of TRs and hypervariable regions would provide reliable molecular resources for future research focusing on the infrageneric taxa identification, phylogenetic resolution, population structure and biodiversity for the genus Taxodium and Cupressophytes.

Trends of litter decomposition and soil organic matter stocks across forested swamp environments of the southeastern US.

A common idea in the discussion of soil carbon processes is that litter decomposition rates and soil carbon stocks are inversely related. To test this overall hypothesis, simultaneous studies were conducted of the relationship of environmental gradients to leaf and wood decomposition, buried cloth decomposition and percent soil organic matter in Taxodium distichum swamps across the Mississippi River Alluvial Valley (MRAV) and northern Gulf of Mexico (GOM) of the US. Decomposition of leaf tissue was 6.2 to 10.9 times faster than wood tissue. Both precipitation and flooding gradients were negatively related to leaf and wood litter decomposition rates based on models developed using Stepwise General Model Selection (MRAV vs. GOM, respectively). Cotton cloth should not be used as a proxy for plant litter without prior testing because cloth responded differently than plant litter to regional environmental gradients in T. distichum swamps. The overall hypothesis was supported in the MRAV because environments with higher precipitation (climate normal) had lower rates of decomposition and higher percent soil organic matter. In the MRAV, higher levels of percent soil organic matter were related to increased 30-year climate normals (30 year averages of precipitation and air temperature comprising southward increasing PrinComp1). Soil organic carbon % in inland vs. coastal T. distichum forests of the MRAV were comparable (range = 1.5% to 26.9% vs. 9.8 to 31.5%, respectively). GOM swamps had lower rates of litter decomposition in more flooded environments. Woody T. distichum detritus had a half-life of up to 300 years in the MRAV, which points to its likely role in the maintenance of inland "teal" soil organic carbon. This unique study can contribute to the discussion of approaches to maintain environments conducive to soil carbon stock maximization.

Terpenoids of the Swamp Cypress Subfamily (Taxodioideae), Cupressaceae, an Overview by GC-MS.

The resins bled from stems and in seed cones and leaves of Cryptomeria japonica, Glyptostrobus pensilis, Taxodium distichum, and T. mucronatum were characterized to provide an overview of their major natural product compositions. The total solvent extract solutions were analyzed as the free and derivatized products by gas chromatography-mass spectrometry to identify the compounds, which comprised minor mono- and sesquiterpenoids, and dominant di- and triterpenoids, plus aliphatic lipids (e.g., n-nonacosan-10-ol). Ferruginol, 7α-p-cymenylferruginol, and chamaecydin were the major characteristic markers for the Taxodioideae conifer subfamily. The mass spectrometric data can aid polar compound elucidation in environmental, geological, archeological, forensic and pharmaceutical studies.

An Integrated Transcriptome and Proteome Analysis Reveals Putative Regulators of Adventitious Root Formation in Taxodium 'Zhongshanshan'.

Adventitious root (AR) formation from cuttings is the primary manner for the commercial vegetative propagation of trees. Cuttings is also the main method for the vegetative reproduction of Taxodium 'Zhongshanshan', while knowledge of the molecular mechanisms regulating the processes is limited. Here, we used mRNA sequencing and an isobaric tag for relative and absolute quantitation-based quantitative proteomic (iTRAQ) analysis to measure changes in gene and protein expression levels during AR formation in Taxodium 'Zhongshanshan'. Three comparison groups were established to represent the three developmental stages in the AR formation process. At the transcript level, 4743 genes showed an expression difference in the comparison groups as detected by RNA sequencing. At the protein level, 4005 proteins differed in their relative abundance levels, as indicated by the quantitative proteomic analysis. A comparison of the transcriptome and proteome data revealed regulatory aspects of metabolism during AR formation and development. In summary, hormonal signal transduction is different at different developmental stages during AR formation. Other factors related to carbohydrate and energy metabolism and protein degradation and some transcription factor activity levels, were also correlated with AR formation. Studying the identified genes and proteins will provide further insights into the molecular mechanisms controlling AR formation.

Higher soil capacity of intercepting heavy rainfall in mixed stands than in pure stands in riparian forests.

Changes in global precipitation patterns would make wet regions more humid and extreme precipitation events occur frequently, followed by widespread flooding. Riparian forests are more capable of withstanding floods than inland forests because they are frequently exposed to short-term flooding events. Although many previous studies have investigated the soil water dynamics of terrestrial forests, little is known about how the soil water of riparian forests responds to different amounts of rainfall and which factors mainly regulate the soil water-holding capacity. Here, we employed stable hydrogen isotope to explore the contribution of different magnitudes of rainfall (7.9, 18.6 and 34.1 mm) to the soil water in two types of riparian forests (pure vs. mixed stand of Populus deltoides) in the middle-lower reaches of the Yangtze River, China. We further used structure equation modelling to determine the relative importance of soil properties and vegetation biomass in affecting the contribution of different magnitudes of rainfall to soil water. Our results revealed that there was no significant difference between these two stand types in the contributions of light and moderate rainfall to soil water, while the contribution of heavy rainfall to soil water (CHRSW) in mixed stand was significantly higher than that in pure stand (74.3% vs. 62.9%), suggesting that mixed stand soil has higher water-holding capacity than pure stand soil. Furthermore, soil properties were the best predictor affecting CHRSW, which explained 68% and 59% of the variation in the CHRSW on the 1st and 8th days after rainfall, respectively. Moreover, the root biomass could indirectly affect the CHRSW. Overall, mixed stand soil had a greater capacity in intercepting and storing rainwater than pure stand soil, implying that the mixed stand plantation, rather than the pure stand, should be recommended in riparian forest restoration projects that aim to improve their capacity for alleviating floods.

High-density genetic map construction and quantitative trait loci identification for growth traits in (Taxodium distichum var. distichum × T. mucronatum) × T. mucronatum.

BACKGROUND: 'Zhongshanshan' is the general designation for the superior interspecific hybrid clones of Taxodium species, which is widely grown for economic and ecological purposes in southern China. Growth is the priority objective in 'Zhongshanshan' tree improvement. A high-density linkage map is vital to efficiently identify key quantitative trait loci (QTLs) that affect growth. RESULTS: In total, 403.16 Gb of data, containing 2016,336 paired-end reads, was obtained after preprocessing. The average sequencing depth was 28.49 in T. distichum var. distichum, 25.18 in T. mucronatum, and 11.12 in each progeny. In total, 524,662 high-quality SLAFs were detected, of which 249,619 were polymorphic, and 6166 of the polymorphic markers met the requirements for use in constructing a genetic map. The final map harbored 6156 SLAF markers on 11 linkage groups, and was 1137.86 cM in length, with an average distance of 0.18 cM between adjacent markers. Separate QTL analyses of traits in different years by CIM detected 7 QTLs. While combining multiple-year data, 13 QTLs were detected by ICIM. 5 QTLs were repeatedly detected by the two methods, and among them, 3 significant QTLs (q6-2, q4-2 and q2-1) were detected in at least two traits. Bioinformatic analysis discoveried a gene annotated as a leucine-rich repeat receptor-like kinase gene within q4-2. CONCLUSIONS: This map is the most saturated one constructed in a Taxodiaceae species to date, and would provide useful information for future comparative mapping, genome assembly, and marker-assisted selection.

Effects of cadmium stress on the antioxidant system and chlorophyll fluorescence characteristics of two Taxodium clones.

KEY MESSAGE: The T.118 and T.406 seedlings showed strong adaptability under Cd concentrations ≤ 50 µM. The mechanisms of photoprotection in T.118 and T.406 differed in high-Cd concentrations. To explore the physiological response characteristics of Taxodium hybrids to cadmium (Cd) stress and provide basis for screening of Cd-tolerant species, the hydroponic cultivation of T.118 and T.406 seedlings was conducted to demonstrate the effects of Cd stress on seedling growth, antioxidant system, and chlorophyll fluorescence parameters. After 35 days of Cd stress at a concentration ≤ 50 µM, the dry weight biomass of the two clones did not significantly differ from that of the control. T.406 exhibited a significant increase in POD activity compared to T.118 and maintained high SOD activity after exposure to high concentrations of Cd, whereas MDA levels showed little changes. Under low-Cd stress, chlorophyll content and fluorescence parameters remained stable, especially for T.406. Under high-Cd concentration stress, the above parameters were lower than the control, with a more significant decrease in T.118 than in T.406. The non-photochemical quenching coefficient (NPQ) of both clones increased with increasing Cd concentration. T.118 showed a greater increase than T.406, particularly under high-Cd concentration stress. The T.118 and T.406 seedlings adapted to low-Cd concentration stress by enhancing their antioxidant enzyme activity to maintain the balance of reactive oxygen metabolism and reduce cellular damage. The photochemical activity of mesophyll cells remained high to maintain photosynthetic capacity and normal seedling growth. T.406 showed stronger resistance to Cd than T.118. T.406 prevented photodamage by promoting the photochemical utilization of the excitation energy and maintaining a strong antioxidant stress ability. Enhancement of heat dissipation capability may be the main photoprotection mechanism of T.118.

Revegetation of the riparian zone of the Three Gorges Dam Reservoir leads to increased soil bacterial diversity.

As one of the most active components in soil, bacteria can affect soil physicochemical properties, its biological characteristics, and even its quality and health. We characterized dynamics of the soil bacterial diversity in planted (with Taxodium distichum) and unplanted soil in the riparian zone of the Three Gorges Dam Reservoir (TGDR), in southwestern China, in order to accurately quantify the changes in long-term soil bacterial community structure after revegetation. Measurements were taken annually in situ in the TGDR over the course of 5 years, from 2012 to 2016. Soil chemical properties and bacterial diversity were analyzed in both the planted and unplanted soil. After revegetation, the soil chemical properties in planted soil were significantly different than in unplanted soil. The effects of treatment, time, and the interaction of both time and treatment had significant impacts on most diversity indices. Specifically, the bacterial community diversity indices in planted soil were significantly higher and more stable than that in unplanted soil. The correlation analyses indicated that the diversity indices correlated with the pH value, organic matter, and soil available nutrients. After revegetation in the riparian zone of the TGDR, the soil quality and health is closely related to the observed bacterial diversity, and a higher bacterial diversity avails the maintenance of soil functionality. Thus, more reforestation should be carried out in the riparian zone of the TGDR, so as to effectively mitigate the negative ecological impacts of the dam. Vegetating the reservoir banks with Taxodium distichum proved successful, but planting mixed stands of native tree species could promote even higher riparian soil biodiversity and improved levels of ecosystem functioning within the TGDR.

Leaf decomposition and nutrient release of three tree species in the hydro-fluctuation zone of the Three Gorges Dam Reservoir, China.

In order to understand the effect of submergence on nutrient release of the reforested tree leaves and assess the environmental risk of leaf decomposition under submergence, the mass loss and nutrient release rates of three reforestation tree species, Taxodium ascendens Brongn, Taxodium distichum (L.) Rich., and Salix matsudana Koidz., at different elevation in the hydro-fluctuation zone of the Three Gorges Dam Reservoir (TGDR) region were tested in situ. Results showed that the initial macroelement contents of the leaves of the three tree species varied among different elevations due to different submergence stresses. All foliar mass loss rates of the three tree species at 165 m a.s.l. were significantly higher than that at 175 m a.s.l. (except that of S. matsudana at 165 m a.s.l.), after 179 days of incubation commenced September 20. After 138 days of incubation commenced October 5, the foliar mass loss rates of the three tree species at 170 m a.s.l. were significantly higher than that at 175 m a.s.l. Moreover, the leaf mass loss rates of S. matsudana were higher than the other two species when compared at the same elevation of the same incubation period. In addition, foliar release rates of N and Ca in T. ascendens, C, N, and Ca in T. distichum as well as Ca in S. matsudana at 165 m a.s.l. after 179 days of incubation and at 170 m a.s.l. after 138 days of incubation were significantly higher than that at 175 m a.s.l., respectively. Leaf mass loss rates of T. ascendens were significantly correlated with its initial leaf K, Ca, and Mg contents. In contrast, leaf mass loss rates of T. distichum had significant correlations with the initial leaf P and K contents, as well as C/P and N/P ratios. However, the mass loss rates of S. matsudana significantly correlated with initial leaf N, P, and Ca contents and C/N, C/P, and N/P ratios. Foliar nutrient release rates, especially the foliar release of C, N, and P of the three tree species, had significant correlations with initial leaf C/P and N/P ratios. Our results suggested that submergence facilitated the decomposition and nutrient release rates of the leaves of the three woody species, especially the broad leaves of S. matsudana, which may potentially cause secondary pollution to the water body of the TGDR. Thus, we suggested that a sustainable harvest of leaves of the reforested forest stands prior to submergence should be considered in the hydro-fluctuation zone so as to protect the water quality of the TGDR.

Taxodione induces apoptosis in BCR-ABL-positive cells through ROS generation.

Chronic myeloid leukemia (CML) and acute lymphoblastic leukemia (ALL) are hematopoietic malignancies caused by the constitutive activation of BCR-ABL tyrosine kinase. Although direct BCR-ABL inhibitors, such as imatinib, were initially successful in the treatment of leukemia, many patients developed drug resistance over time due to the gatekeeper mutation of BCR-ABL T315I. In the present study, we found that taxodione, a quinone methide diterpene isolated from Taxodium distichum, significantly induced apoptosis in human myelogenous leukemia-derived K562 cells, which were transformed by BCR-ABL. Taxodione reduced the activities of mitochondrial respiratory chain (MRC) complexes III and V, which appeared to induce the production of reactive oxygen species (ROS). N-acetylcysteine (NAC), an antioxidant agent, canceled taxodione-induced ROS production, reductions in MRC activities, particularly complex V, and apoptotic cell death. Furthermore, in K562 cells treated with taxodione, BCR-ABL and its major signaling molecules, such as STAT5 and Akt were sequestered in mitochondrial fraction, and their localization changes decrease their abilities to stimulate cell proliferation, suggesting that these actions seem to be a mechanism how taxodione functions as an anti-tumor drug. Strikingly, NAC canceled these taxodione-caused anti-cancer effects. Taxodione induced apoptosis in transformed Ba/F3 cells induced not only by BCR-ABL, but also T315I-mutated BCR-ABL through the generation of ROS. Collectively, the present results suggest that in the treatment of leukemia, taxodione has potential as a compound with high efficacy to overcome BCR-ABL T315I mutation-mediated resistance in leukemia cells.